Learn / Metabolism

Metabolic pathways

Every FMK pathway as a clickable map. Pick one pathway to hammer it — next step, enzyme, regulator, cofactor, and the facts that get tested (NADPH and who needs it, rate-limiting steps, deficiencies) — or set it to all pathways for a mixed drill. Every answer says which enzyme and which pathway.

Pathway
Heme degradation & bilirubin (jaundice) · Macrophages of spleen, liver (Kupffer) and marrow → plasma (albumin) → hepatocyte smooth ER → bile → colon → stool and urine. Enzymes sit beside the arrows, ★ = rate-limiting, ⊕/⊖ = activators/inhibitors (toggle), −ATP +NADH = what the step spends and makes (toggle ⚡), dashed = allosteric signal, shaded bands = compartment. Drag to pan.
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① MACROPHAGE — spleen · liver Kupffer cells · marrow ② PLASMA ③ HEPATOCYTE ④ BILE → GUT ⑤ EXCRETED SYSTEMIC IRON — FMK-09.2 slide 25Senescent RBC heme (~120 days)Senescent RBC heme (~120 days)Biliverdin (GREEN)Biliverdin (GREEN)Unconjugated bilirubin (lipophilic, NOT water-soluble)Unconjugated bilirubin(lipophilic, NOT water-soluble)+ CO → exhaled (the ONLY endogenous source)+ CO → exhaled (the ONLYendogenous source)+ Fe²⁺ → ferritin, reused for new heme+ Fe²⁺ → ferritin, reused fornew hemeFERROPORTIN — the iron exit channelFERROPORTIN — the iron exitchannelHEPCIDIN (liver) degrades it · ↓ when iron is lowHEPCIDIN (liver) degrades it ·↓ when iron is lowHFE mutation → low hepcidin → HEMOCHROMATOSISHFE mutation → low hepcidin →HEMOCHROMATOSISBilirubin–ALBUMIN complexBilirubin–ALBUMIN complexBilirubin on ligandin (smooth ER)Bilirubin on ligandin (smoothER)CONJUGATED bilirubin — diglucuronide, water-solubleCONJUGATED bilirubin —diglucuronide, water-solubleBile → small intestineBile → small intestineUrobilinogen (colourless)Urobilinogen (colourless)Stercobilin → STOOL (brown)Stercobilin → STOOL (brown)Urobilin → URINE (yellow)Urobilin → URINE (yellow)HEME OXYGENASE ★rate-limiting — opens thering inside the MACROPHAGE NADPH → NADP⁺BILIVERDIN REDUCTASE —green → yellow (thehealing bruise) NADPH → NADP⁺leaves the macrophage onALBUMIN — ⊖ sulfonamides &salicylates displace itOATP uptake → ligandin —ROTOR syndromeUGT1A1 — GILBERT ·CRIGLER-NAJJAR I & II ·neonatal jaundiceMRP2 — limits hepatichandling · DUBIN-JOHNSON ·OBSTRUCTION backs up hereCOLONIC BACTERIAdeconjugate & reduce~80–90% oxidised~10–20% reabsorbed →enterohepatic; a little tothe kidney

Heme degradation & bilirubin (jaundice)

Bilirubin–albumin (plasma)

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